Overview

Concepts

Classes

Specializations

Shortcuts

Functions

Alignments

Alphabets

Array Handling

Blast

Chaining

Comparisons

Containers

Content Manipulation

Dependent Objects

Graph

Index

Input/Output

Iteration

Map

Memory

Miscellaneous

Motif Search

absFreqOfLettersInSeq

absFreqOfLettersInSetOfSeqs

addValue

backgroundFrequency

binomialCoefficient

completeProfile

convertPatternToProfile

convertResidueToFrequencyDist

convertSetOfPatternsToProfile

determineConsensusSeq

display

displayResult

em

factorial

findMotif

hammingDistance

inverseHash

logarithmize

normalize

posOfMax

sum

Pipelining

Scoring

Searching

Seed Handling

Sequences

Metafunctions

Tags

Adaptions

Examples

Searching